| Protein ZmWRKY88 | |
|---|---|
|
ZmWRKY88 is a protein in the WRKY family.
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| Information | |
| TF Name: | ZmWRKY88 |
| Species: | Maize |
| TF Family: | WRKY |
| Gene Name(Synonym): | WRKY88 |
| Uniprot ID: | K7VBJ3 |
Protein ZmWRKY88
ZmWRKY88 is a protein in the WRKY family.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF03106 | |
| Zm00001eb368860_T001 |  |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d012507 | DAPseq |  |
sequence | fimo | position |
| Zm00001d012507 | DAPseq |  |
sequence | fimo | position |
| Zm00001d012507 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d012507 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmWRKY88 is the regulator
Interactions where ZmWRKY88 is the target
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Zm00001eb368860_T001 from maize genome v5
Amino Acid Sequence
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MATDQDAKLFDVLAGGYHLTTQLQALLGGRRPLDGIGQQEAMAFSQELSRVFKVSMSMLNGSAVAGAKTAPAVRPGAIVQ
AVAKDKRARYYFRCSRDRRCEAKKKVQQQDDDGSHLPPMFEVTYLNEHTCHALRATTTANGDAAVPVPVAASPPTTNRRW
YYRDDAARDDDGGLQFDLSSFPRMSGPGGAGGSAQENQTIVSCLADVIRGAAPSPWSPVAADASDAGAASYGPAPMQMQM
MQASGSGHSASVAQDGGATMMTTMIGTDDTDFCCWDPSLVGEADHQMMDEDHRDMLHVVDVARLADTVWPRHTTPAGAWH
CPLCPQI
MATDQDAKLFDVLAGGYHLTTQLQALLGGRRPLDGIGQQEAMAFSQELSRVFKVSMSMLNGSAVAGAKTAPAVRPGAIVQ
AVAKDKRARYYFRCSRDRRCEAKKKVQQQDDDGSHLPPMFEVTYLNEHTCHALRATTTANGDAAVPVPVAASPPTTNRRW
YYRDDAARDDDGGLQFDLSSFPRMSGPGGAGGSAQENQTIVSCLADVIRGAAPSPWSPVAADASDAGAASYGPAPMQMQM
MQASGSGHSASVAQDGGATMMTTMIGTDDTDFCCWDPSLVGEADHQMMDEDHRDMLHVVDVARLADTVWPRHTTPAGAWH
CPLCPQI
MATDQDAKLFDVLAGGYHLTTQLQALLGGRRPLDGIGQQEAMAFSQELSRVFKVSMSMLNGSAVAGAKTAPAVRPGAIVQ
AVAKDKRARYYFRCSRDRRCEAKKKVQQQDDDGSHLPPMFEVTYLNEHTCHALRATTTANGDAAVPVPVAASPPTTNRRW
YYRDDAARDDDGGLQFDLSSFPRMSGPGGAGGSAQENQTIVSCLADVIRGAAPSPWSPVAADASDAGAASYGPAPMQMQM
MQASGSGHSASVAQDGGATMMTTMIGTDDTDFCCWDPSLVGEADHQMMDEDHRDMLHVVDVARLADTVWPRHTTPAGAWH
CPLCPQI
MATDQDAKLFDVLAGGYHLTTQLQALLGGRRPLDGIGQQEAMAFSQELSRVFKVSMSMLNGSAVAGAKTAPAVRPGAIVQ
AVAKDKRARYYFRCSRDRRCEAKKKVQQQDDDGSHLPPMFEVTYLNEHTCHALRATTTANGDAAVPVPVAASPPTTNRRW
YYRDDAARDDDGGLQFDLSSFPRMSGPGGAGGSAQENQTIVSCLADVIRGAAPSPWSPVAADASDAGAASYGPAPMQMQM
MQASGSGHSASVAQDGGATMMTTMIGTDDTDFCCWDPSLVGEADHQMMDEDHRDMLHVVDVARLADTVWPRHTTPAGAWH
CPLCPQI
MATDQDAKLFDVLAGGYHLTTQLQALLGGRRPLDGIGQQEAMAFSQELSRVFKVSMSMLNGSAVAGAKTAPAVRPGAIVQ
AVAKDKRARYYFRCSRDRRCEAKKKVQQQDDDGSHLPPMFEVTYLNEHTCHALRATTTANGDAAVPVPVAASPPTTNRRW
YYRDDAARDDDGGLQFDLSSFPRMSGPGGAGGSAQENQTIVSCLADVIRGAAPSPWSPVAADASDAGAASYGPAPMQMQM
MQASGSGHSASVAQDGGATMMTTMIGTDDTDFCCWDPSLVGEADHQMMDEDHRDMLHVVDVARLADTVWPRHTTPAGAWH
CPLCPQI
MATDQDAKLFDVLAGGYHLTTQLQALLGGRRPLDGIGQQEAMAFSQELSRVFKVSMSMLNGSAVAGAKTAPAVRPGAIVQ
AVAKDKRARYYFRCSRDRRCEAKKKVQQQDDDGSHLPPMFEVTYLNEHTCHALRATTTANGDAAVPVPVAASPPTTNRRW
YYRDDAARDDDGGLQFDLSSFPRMSGPGGAGGSAQENQTIVSCLADVIRGAAPSPWSPVAADASDAGAASYGPAPMQMQM
MQASGSGHSASVAQDGGATMMTTMIGTDDTDFCCWDPSLVGEADHQMMDEDHRDMLHVVDVARLADTVWPRHTTPAGAWH
CPLCPQI
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF03106 |
|
| PF03106 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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ATGGCAACTGATCAAGACGCGAAGC...
ATGGCAACTGATCAAGACGCGAAGCTGTTCGACGTGCTCGCCGGCGGTTACCATCTCACCACCCAGCTCCAGGCATTGCTCGGCGGCCGCCGTCCCCTGGATGGCATCGGCCAGCAGGAGGCCATGGCGTTCAGCCAGGAGCTCTCGCGCGTGTTCAAGGTATCCATGTCCATGCTGAACGGTAGCGCAGTGGCAGGAGCGAAGACGGCGCCGGCGGTAAGGCCCGGCGCCATCGTTCAGGCGGTGGCCAAGGATAAGCGTGCAAGGTACTACTTCAGGTGCAGCCGCGACCGGCGCTGCGAAGCGAAGAAGAAGGTGCAGCAGCAGGACGACGACGGCAGCCATCTGCCTCCCATGTTCGAGGTCACCTACTTGAACGAGCACACGTGCCATGCGCTCCGTGCCACCACCACCGCCAACGGCGACGCTGCTGTACCTGTACCTGTAGCGGCATCGCCCCCGACCACGAACCGGCGGTGGTACTACCGGGACGACGCCGCGAGAGACGACGACGGTGGCCTGCAGTTCGACCTGTCGTCGTTTCCCCGCATGAGCGGCCCCGGAGGCGCCGGCGGCAGCGCCCAGGAGAACCAGACCATCGTGTCGTGCCTCGCGGACGTCATCCGCGGAGCCGCGCCGTCGCCGTGGTCGCCAGTAGCGGCAGACGCAAGCGATGCTGGCGCGGCGTCGTACGGGCCCGCGCCGATGCAGATGCAGATGATGCAGGCCTCCGGCTCCGGGCACTCGGCGAGCGTGGCGCAAGATGGTGGGGCCACGATGATGACGACGATGATCGGCACGGACGACACGGACTTTTGCTGCTGGGATCCCTCGCTGGTGGGGGAGGCCGATCATCAGATGATGGACGAGGACCACCGCGACATGCTGCACGTGGTGGATGTCGCCCGGCTCGCGGACACGGTGTGGCCGCGGCACACCACCCCCGCGGGCGCTTGGCACTGTCCGCTGTGCCCGCAGATATAG
GRMZM2G029282_T01 from maize genome v3
Amino Acid Sequence
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MATDQDAKLFDVLAGGYHLTTQLQALLGGRRPLDGIGQQEAMAFSQELSRVFKVSMSMLNGSAVAGAKTAPAVRPGAIVQ
AVAKDKRARSDSREVVTPARRSREDGVTRKEITASPYKDGYVWRKYGQKNIQNCNFVRYYFRCSRDRRCEAKKKVQQQDD
DGSHLPPMFEVTYLNEHTCHALRATTTANGDAAVPVPVAASPPTTNRRWYYRDDAARDDDGGLQFDLSSFPRMSGPGGAG
GSAQENQTIVSCLADVIRGAAPSPWSPVAADASDAGAASYGPAPMQMQMMQASGSGHSASVAQDGGATMMTTMIGTDDTD
FCCWDPSLVGEADHQMMDEDHRDMLHVVDVARLADTVWPRHTTPAGAWHCPLCPQI
Nucleotide Sequence
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ATGGCAACTGATCAAGACGCGAAGC...
ATGGCAACTGATCAAGACGCGAAGCTGTTCGACGTGCTCGCCGGCGGTTACCATCTCACCACCCAGCTCCAGGCATTGCTCGGCGGCCGCCGTCCCCTGGATGGCATCGGCCAGCAGGAGGCCATGGCGTTCAGCCAGGAGCTCTCGCGCGTGTTCAAGGTATCCATGTCCATGCTGAACGGTAGCGCAGTGGCAGGAGCGAAGACGGCGCCGGCGGTAAGGCCCGGCGCCATCGTTCAGGCGGTGGCCAAGGATAAGCGTGCAAGGAGTGATAGTAGAGAAGTGGTTACTCCCGCCAGAAGGAGTAGAGAAGATGGGGTTACTCGGAAGGAGATTACGGCTTCGCCATACAAGGATGGTTACGTGTGGAGAAAATACGGGCAAAAGAACATCCAGAACTGCAATTTCGTGAGGTACTACTTCAGGTGCAGCCGCGACCGGCGCTGCGAAGCGAAGAAGAAGGTGCAGCAGCAGGACGACGACGGCAGCCATCTGCCTCCCATGTTCGAGGTCACCTACTTGAACGAGCACACGTGCCATGCGCTCCGTGCCACCACCACCGCCAACGGCGACGCTGCTGTACCTGTACCTGTAGCGGCATCGCCCCCGACCACGAACCGGCGGTGGTACTACCGGGACGACGCCGCGAGAGACGACGACGGTGGCCTGCAGTTCGACCTGTCGTCGTTTCCCCGCATGAGCGGCCCCGGAGGCGCCGGCGGCAGCGCCCAGGAGAACCAGACCATCGTGTCGTGCCTCGCGGACGTCATCCGCGGAGCCGCGCCGTCGCCGTGGTCGCCAGTAGCGGCAGACGCAAGCGATGCTGGCGCGGCGTCGTACGGGCCCGCGCCGATGCAGATGCAGATGATGCAGGCCTCCGGCTCCGGGCACTCGGCGAGCGTGGCGCAAGATGGTGGGGCCACGATGATGACGACGATGATCGGCACGGACGACACGGACTTTTGCTGCTGGGATCCCTCGCTGGTGGGGGAGGCCGATCATCAGATGATGGACGAGGACCACCGCGACATGCTGCACGTGGTGGATGTCGCCCGGCTCGCGGACACGGTGTGGCCGCGGCACACCACCCCCGCGGGCGCTTGGCACTGTCCGCTGTGCCCGCAGATATAG
Zm00001d012507_T001 from maize genome v4
Amino Acid Sequence
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MATDQDAKLFDVLAGGYHLTTQLQALLGGRRPLDGIGQQEAMAFSQELSRVFKVSMSMLNGSAVAGAKTAPAVRPGAIVQ
AVAKDKRARSDSREVVTPARRSREDGVTRKEITASPYKDGYVWRKYGQKNIQNCNFVRCSRDRRCEAKKKVQQQDDDGSH
LPPMFEVTYLNEHTCHALRATTTANGDAAVPVPVAASPPTTNRRWYYRDDAARDDDGGLQFDLSSFPRMSGPGGAGGSAQ
ENQTIVSCLADVIRGAAPSPWSPVAADASDAGAASYGPAPMQMQMMQASGSGHSASVAQDGGATMMTTMIGTDDTDFCCW
DPSLVGEADHQMMDEDHRDMLHVVDVARLADT
Nucleotide Sequence
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ATGGCAACTGATCAAGACGCGAAGC...
ATGGCAACTGATCAAGACGCGAAGCTGTTCGACGTGCTCGCCGGCGGTTACCATCTCACCACCCAGCTCCAGGCATTGCTCGGCGGCCGCCGTCCCCTGGATGGCATCGGCCAGCAGGAGGCCATGGCGTTCAGCCAGGAGCTCTCGCGCGTGTTCAAGGTATCCATGTCCATGCTGAACGGTAGCGCAGTGGCAGGAGCGAAGACGGCGCCGGCGGTAAGGCCCGGCGCCATCGTTCAGGCGGTGGCCAAGGATAAGCGTGCAAGGAGTGATAGTAGAGAAGTGGTTACTCCCGCCAGAAGGAGTAGAGAAGATGGGGTTACTCGGAAGGAGATTACGGCTTCGCCATACAAGGATGGTTACGTGTGGAGAAAATACGGGCAAAAGAACATCCAGAACTGCAATTTCGTGAGGTGCAGCCGCGACCGGCGCTGCGAAGCGAAGAAGAAGGTGCAGCAGCAGGACGACGACGGCAGCCATCTGCCTCCCATGTTCGAGGTCACCTACTTGAACGAGCACACGTGCCATGCGCTCCGTGCCACCACCACCGCCAACGGCGACGCTGCTGTACCTGTACCTGTAGCGGCATCGCCCCCGACCACGAACCGGCGGTGGTACTACCGGGACGACGCCGCGAGAGACGACGACGGTGGCCTGCAGTTCGACCTGTCGTCGTTTCCCCGCATGAGCGGCCCCGGAGGCGCCGGCGGCAGCGCCCAGGAGAACCAGACCATCGTGTCGTGCCTCGCGGACGTCATCCGCGGAGCCGCGCCGTCGCCGTGGTCGCCAGTAGCGGCAGACGCAAGCGATGCTGGCGCGGCGTCGTACGGGCCCGCGCCGATGCAGATGCAGATGATGCAGGCCTCCGGCTCCGGGCACTCGGCGAGCGTGGCGCAAGATGGTGGGGCCACGATGATGACGACGATGATCGGCACGGACGACACGGACTTTTGCTGCTGGGATCCCTCGCTGGTGGGGGAGGCCGATCATCAGATGATGGACGAGGACCACCGCGACATGCTGCACGTGGTGGATGTCGCCCGGCTCGCGGACACG
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